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mkdir %HOMEPATH%\pymol Then make sure, PyMOL starts here, when you open the shortcut. Now start pymol, and enjoy all the plugins available from the menu. Then "File->Save as->All files-> C:\Python27\Lib\site-packages\pymol\pymol_path\run_on_startup.py environ ) # Make setting changes to Plugin Manager import ugins pymol. # Add paths to sys.path so PyMOL can find modules and scripts import sys, os pymol_git = os. Navigate to the installation directory in a CMD window (Not PowerShell!) Download the appropriate wheel files, along with all requirement wheel files ( Numpy+MKL) into a single file directory, e.g., C:\Users\\Downloads.Have a look in "Add/Remove" programs if it's installed already. Otherwise the installed PyMOL binary may fail to run (without any error message!). Install the current Microsoft Visual C++ Redistributable for Visual Studio 2015, 20.Make sure the option to add environment variables is selected or add the folder of python.exe to system PATH. Use the standard options, which should mean that the installation directory is most likely C:\Users\\AppData\Local\Programs\Python\Python38). Install the latest version of Python 3 for Windows (e.g., by going to and choosing the 圆4 EXE installer).Pre-compiled Open-Source PyMOL is available free from Christoph Gohlke of the Laboratory for Fluorescence Dynamics, University of California, Irvine. It also allows sponsors to create highly customized PyMOL installations which might not be possible with the MSI installer. Open-Source PyMOL is available free of charge. The bundle also includes ready-to-use APBS, RigiMOL, an MPEG encoder for movie export, and a small molecule energy minimization engine. Schrödinger provides an installer to paying sponsors (EXE for PyMOL 2.0, MSI for previous version). 2.1 Extend PyMOL with additional scripts.
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